coMET

You need to define your format

Format of data file:

Give a lable:

Define the symbol of data:

circle-fill

Correlation matrix or Raw data

You need to define your format

Format of the correlation matrice:

Define the color scheme of correlation matrix:

Blue to Red via white

Configuration file

If you do not want to define the parameters of coMET via the interface, you can download the example configuration file and modify according to your data. But you have to modify at least 3 parameters ( mydata.format (format of info file), CORMATRIX.FORMAT ( format of raw or correlation matrice), cormatrix.method (method to analyse the raw data if it is raw format) )

Parameters for P-value plot

Significant P-value threshold (for example 1e-8):

Second significant P-value threshold (for example 1e-5):

higher P-value threshold displayed (for example 0):

Factor to visualise the size of beta (for example 0.3):

Font size of the sample labels (for example 5):

Select your scale of y-values

log10

Select a CpG reference

Parameters of image

Define the title of your plot:

Info file for the second set of data (e.g.= gene expression, validation data) (optional, no limitation)

Format of data file:

Give a lable:

Define the symbol of data:

circle-fill

Annotation track (optional)

Select multiple annotation tracks (max 6):

Add user-customised annotation track

Save your image

Submit the data:

The creation of plot takes time relative to the time to connect UCSC and ENSEMBL